Retraction for Yang et al., Y4lO of Rhizobium sp. Strain NGR234 Is a Symbiotic Determinant Required for Symbiosome Differentiation.
نویسندگان
چکیده
Volume 191, no. 3, p. 735–746, 2009. In the original article describing the symbiotic phenotype of the mutant NGR y4lO, we concluded that observed impaired symbiosome differentiation and nitrogen fixation were due to a mutation in the nopJ (formerly y4lO) gene, suggesting a role for nopJ in symbiosome differentiation in host cells of leguminous nodules. In response to a contradictory report by Kambara et al. (K. Kambara, S. Ardissone, H. Kobayashi, M. M. Saad, O. Schumpp, W. J. Broughton, and W. J. Deakin, Mol. Microbiol. 71:92–106, 2009), we shotgun sequenced the genome of NGR y4lO and found a 31.9-kb deletion in the symbiotic replicon. Confirmation of this spontaneous deletion by PCR and phenotypes of two additional nopJ knockout mutants have led us to conclude that the observed phenotype of NGR y4lO described in the original paper is due to the deletion of nitrogen fixation (nif) genes rather than to knockout of the nopJ gene. We regret that retraction of this article is necessary and apologize for any inconvenience caused.
منابع مشابه
Y4lO of Rhizobium sp. strain NGR234 is a symbiotic determinant required for symbiosome differentiation.
Type 3 (T3) effector proteins, secreted by nitrogen-fixing rhizobia with a bacterial T3 secretion system, affect the nodulation of certain host legumes. The open reading frame y4lO of Rhizobium sp. strain NGR234 encodes a protein with sequence similarities to T3 effectors from pathogenic bacteria (the YopJ effector family). Transcription studies showed that the promoter activity of y4lO depende...
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Lotus japonicus, a model legume, develops an efficient, nitrogen-fixing symbiosis with Mesorhizobium loti that promotes plant growth. Lotus japonicus also forms functional nodules with Rhizobium sp. NGR234 and R. etli. Yet, in a plant defence-like reaction, nodules induced by R. etli quickly degenerate, thus limiting plant growth. In contrast, nodules containing NGR234 are long-lasting. It was ...
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Rhizobium sp. strain NGR234 contains three replicons: the symbiotic plasmid or pNGR234a, a megaplasmid (pNGR234b), and the chromosome. Symbiotic gene sequences not present in pNGR234a were analyzed by hybridization. DNA sequences homologous to the genes fixLJKNOPQGHIS were found on the chromosome, while sequences homologous to nodPQ and exoBDFLK were found on pNGR234b.
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Rhizobium sp. strain NGR234 possesses a functional type three secretion system (TTSS), through which a number of proteins, called nodulation outer proteins (Nops), are delivered to the outside of the cell. A major constraint to the identification of Nops is their low abundance in the supernatants of NGR234 strains grown in culture. To overcome this limitation, a more sensitive proteomics-based ...
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The type three secretion system (TTSS) encoded by pNGR234a, the symbiotic plasmid of Rhizobium sp. strain NGR234, is responsible for the flavonoid- and NodD1-dependent secretion of nodulation outer proteins (Nops). Abolition of secretion of all or specific Nops significantly alters the nodulation ability of NGR234 on many of its hosts. In the closely related strain Rhizobium fredii USDA257, ina...
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ورودعنوان ژورنال:
- Journal of bacteriology
دوره 197 18 شماره
صفحات -
تاریخ انتشار 2015